Vps41 - SNV Details



 Gene Information 
Gene Name Vps41
Old Gene Names for Vps41 Ai317346
Gene Description vacuolar protein sorting 41 (yeast) [Source:MGI Symbol;Acc:MGI:1929215]
Uniprot Name
CCDS Name
Gene GO
early endosome; membrane; Golgi vesicle transport; microtubule; zinc ion binding; microtubule binding; Golgi-associated vesicle; protein binding; binding; intracellular protein transport; cytosol; vesicle-mediated transport; late endosome; HOPS complex
Homolog in other species VPS41
Omim http://omim.org/entry/605485
Immgen Expression
HIGH(HIGHER IN MYELOID GROUP, DC GROUP, TGD GROUP)
Gnf Expression
HIGH
MEDIAN/HIGH(LOWER IN TESTIS, FERTILIZEDEGG, OOCYTE, KIDNEY, LIVER, SPLEEN, THYROID)
Novel Yes

 Mutation Information 
Mutation Type Non-synonymous
Ensembl ID ENSMUSG00000041236
Chromosome 13
Coordinate 18,866,150     (Assembly: GRCm38)    
Ref Base A
Codon Change Agt/Ggt
Var Base G
Zygosity Heterozygous
Read Depth 24
Allele Frequency
A:R0.58
G:V0.42
Amino Acid Position 838
Amino Acid Change S->G (Serine -> Glycine)
Sample ID IGL01134
Median Base Quality 37.5
Backgrounds C57BL/6n
Source Australian Phenomics Facility (APF-G1)
Other variants in this mouse 33 Other Mutations

 Predictions 
Polyphen Score 0.11
Polyphen Prediction Benign
Sift Score 0.34
Sift Prediction tolerated

 Protein domains 
ENSMUSP00000072729:
Image provided by Ensembl

Full name Short name Interpro SeqRegionName Type Start End Description Search pathways
Zinc finger, RING-type Znf_RING IPR001841 ENSMUSP00000072729 Prosite_profiles 790
838 Description available Search pathways
Vacuolar protein sorting-associated protein 41 VPS41 IPR016902 ENSMUSP00000072729 PIRSF 1
845 Description available Search pathways

 Availability Details 
Availability Cryopreserved , Progeny Cryopreserved