Trim56 - SNV Details



 Gene Information 
Gene Name Trim56
Old Gene Names for Trim56 A130009k11rik , Gm452
Gene Description tripartite motif-containing 56 [Source:MGI Symbol;Acc:MGI:2685298]
Uniprot Name
CCDS Name
Gene GO
cytoplasm; intracellular; zinc ion binding; ubiquitin-protein ligase activity; protein binding; protein K63-linked ubiquitination; interferon-beta production; defense response to virus; response to type I interferon
Homolog in other species TRIM56
Immgen Expression
MEDIAN(LOW IN PROB.FRBC.FL, DC8+.TH, DC.LC.SK)
Gnf Expression
HIGH(HIGHER IN IMM GROUPS, OESTEO GROUP, EPITH GROUP, BLADDER, UTERUS, OVARY, LUNG, TRACHEA AND ADIPOSETISSUE, PROSTATE, UMBLICALCORD)
Novel Yes

 Mutation Information 
Mutation Type Non-synonymous
Ensembl ID ENSMUSG00000043279
Chromosome 5
Coordinate 137,112,906     (Assembly: GRCm38)    
Ref Base A
Var Base T
Zygosity Heterozygous
Read Depth 43
Allele Frequency
A:R0.63
T:V0.37
Amino Acid Change S->R (Serine -> Arginine)
Sample ID IGL02653
Median Base Quality 38
Backgrounds C57BL/6n
Source Australian Phenomics Facility (APF-G1)
Other variants in this mouse 37 Other Mutations

 Predictions 
Polyphen Score 0.99
Polyphen Prediction Probably damaging

 Availability Details 
Availability Cryopreserved , Progeny Cryopreserved