Soga1 - SNV Details



 Gene Information 
Gene Name Soga1
Old Gene Names for Soga1 D430036n24rik , 9830001h06rik , Ai426038
Gene Description RIKEN cDNA 9830001H06 gene [Source:MGI Symbol;Acc:MGI:2444575]
Uniprot Name
CCDS Name
Gene GO
regulation of autophagy; biological_process; extracellular space; molecular_function
Homolog in other species KIAA0889
Immgen Expression
MEDIAN(HIGH IN DC GROUP, MYELOID GROUP, BCELL GROUP)
Gnf Expression
MEDIAN
LOW/MEDIAN
Novel Yes

 Mutation Information 
Mutation Type Non-synonymous
Ensembl ID ENSMUSG00000055485
Chromosome 2
Coordinate 157,040,743     (Assembly: GRCm38)    
Ref Base A
Var Base G
Zygosity Heterozygous
Read Depth 48
Allele Frequency
A:R0.48
G:V0.52
Amino Acid Change V->A (Valine -> Alanine)
Sample ID IGL02643
Median Base Quality 35
Backgrounds C57BL/6n
Source Australian Phenomics Facility (APF-G1)
Other variants in this mouse 42 Other Mutations

 Predictions 
Polyphen Score 1
Polyphen Prediction Probably damaging

 Availability Details 
Availability Progeny Cryopreserved