Sdk1 - SNV Details



 Gene Information 
Gene Name Sdk1
Old Gene Names for Sdk1 6720466o15rik
Gene Description sidekick homolog 1 (chicken) [Source:MGI Symbol;Acc:MGI:2444413]
Uniprot Name
CCDS Name
Gene GO
integral to membrane; cell adhesion; protein binding; molecular_function
Homolog in other species SDK1
Immgen Expression
MEDIAN(HIGHER IN NK GROUP, T.DPSM.TH, T.8EFF.SP.OT1.D6.VSVOVA, T.8MEM.LN,TGD.SP,T.4FP3+25+.SP,T.4NVE.PP)
Gnf Expression
LOW/MEDIAN
Novel Yes

 Mutation Information 
Mutation Type Non-synonymous
Ensembl ID ENSMUSG00000039683
Chromosome 5
Coordinate 141,610,032     (Assembly: GRCm38)    
Ref Base T
Codon Change Ttt/Ctt
Var Base C
Zygosity Heterozygous
Read Depth 59
Allele Frequency
T:R0.49
C:V0.51
Amino Acid Position 148
Amino Acid Change F->L (Phenylalanine -> Leucine)
Sample ID IGL02634
Median Base Quality 39
Backgrounds C57BL/6n
Source Australian Phenomics Facility (APF-G1)
Other variants in this mouse 46 Other Mutations

 Predictions 
Polyphen Score 0
Polyphen Prediction Benign
Sift Score 0.38
Sift Prediction tolerated

 Protein domains 
ENSMUSP00000082928:
Image provided by Ensembl

Full name Short name Interpro SeqRegionName Type Start End Description Search pathways
Immunoglobulin subtype Ig_sub IPR003599 ENSMUSP00000082928 Smart 93
170 Description available Search pathways
Immunoglobulin subtype 2 Ig_sub2 IPR003598 ENSMUSP00000082928 Smart 99
158 Description available Search pathways
Immunoglobulin I-set Ig_I-set IPR013098 ENSMUSP00000082928 Pfam 97
159 Description available Search pathways
Immunoglobulin-like domain Ig-like_dom IPR007110 ENSMUSP00000082928 Prosite_profiles 86
168 Description available Search pathways
Immunoglobulin Immunoglobulin IPR013151 ENSMUSP00000082928 Pfam 101
153 Description available Search pathways

 Availability Details 
Availability Progeny Cryopreserved