Lama3 - SNV Details



 Human Rare Diseases 
LOC syndrome
Generalized junctional epidermolysis bullosa, non-Herlitz type
Junctional epidermolysis bullosa, Herlitz type

 Gene Information 
Gene Name Lama3
Gene Description laminin, alpha 3 [Source:MGI Symbol;Acc:MGI:99909]
MGI phenotype Mice homozygous for a targeted null mutation develop a lethal blistering phenotype similar to human junctional epidermolysis bullosa, and die 2-3 days after birth from a failure to thrive.
Uniprot Name
CCDS Name
Gene GO
basement membrane; regulation of cell migration; cell adhesion; regulation of embryonic development; protein binding; receptor binding; laminin-1 complex; regulation of cell adhesion; laminin-5 complex
Homolog in other species LAMA3
Omim http://omim.org/entry/600805
Immgen Expression
MEDIAN(HIGH IN TGD.VG5+.ACT.IEL, NK GROUP, T.8EFF.SP.OT1.D6.VSVOVA, DC.LC.SK, MYELOID GROUP)
Gnf Expression
MEDIAN(HIGH IN UMBLICALCORD, PLACENTA, LUNG)
Novel Yes

 Mutation Information 
Mutation Type Non-synonymous
Ensembl ID ENSMUSG00000024421
Chromosome 18
Coordinate 12,491,476     (Assembly: GRCm38)    
Ref Base A
Codon Change aAt/aTt
Var Base T
Zygosity Heterozygous
Read Depth 16
Allele Frequency
A:R0.50
T:V0.50
Amino Acid Position 1426
Amino Acid Change N->I (Asparagine -> Isoleucine)
Sample ID IGL02342
Median Base Quality 35.5
Backgrounds C57BL/6j
Source Australian Phenomics Facility (APF-G1)
Other variants in this mouse 54 Other Mutations

 Predictions 
Polyphen Score 1
Polyphen Prediction Probably damaging
Sift Score 0
Sift Prediction deleterious

 Protein domains 
ENSMUSP00000089703:
Image provided by Ensembl

Full name Short name Interpro SeqRegionName Type Start End Description Search pathways
EGF-like, laminin EGF_laminin IPR002049 ENSMUSP00000089703 Pfam 1402
1450 Description available Search pathways
EGF-like, laminin EGF_laminin IPR002049 ENSMUSP00000089703 Prosite_profiles 1402
1452 Description available Search pathways
EGF-like, laminin EGF_laminin IPR002049 ENSMUSP00000089703 Smart 1402
1450 Description available Search pathways

 Availability Details 
Availability Cryopreserved