Trim13 - SNV Details



 Gene Information 
Gene Name Trim13
Old Gene Names for Trim13 Rfp2 , 3110001l12rik
Gene Description tripartite motif-containing 13 [Source:MGI Symbol;Acc:MGI:1913847]
Uniprot Name
CCDS Name
Gene GO
proteasomal ubiquitin-dependent protein catabolic process; integral to membrane; cytoplasm; signal transduction; ER-associated protein catabolic process; endoplasmic reticulum membrane; intracellular; zinc ion binding; ubiquitin-protein ligase activity; protein binding; positive regulation of macroautophagy; response to gamma radiation; positive regulation of cell death; positive regulation of I-kappaB kinase/NF-kappaB cascade; protein autoubiquitination; perinuclear endoplasmic reticulum; signal transducer activity
Homolog in other species TRIM13
Omim http://omim.org/entry/605661
Immgen Expression
MEDIAN(HIGHER IN DC.LC.SK)
Gnf Expression
HIGH(HIGHER IN FERTILIZED EGG AND OOCYTES)
Novel Yes

 Mutation Information 
Mutation Type Non-synonymous
Ensembl ID ENSMUSG00000035235
Chromosome 14
Coordinate 61,605,723     (Assembly: GRCm38)    
Ref Base T
Codon Change aaT/aaA
Var Base A
Zygosity Heterozygous
Read Depth 11
Allele Frequency
T:R0.36
A:V0.64
Amino Acid Position 396
Amino Acid Change N->K (Asparagine -> Lysine)
Sample ID IGL01760
Median Base Quality 40
Backgrounds C57BL/6NCrl
Source Australian Phenomics Facility (APF-G1)
Other variants in this mouse 29 Other Mutations

 Predictions 
Polyphen Score 0.27
Polyphen Prediction Benign
Sift Score 0.21
Sift Prediction tolerated

 Availability Details 
Availability Cryopreserved