Tspan5 - SNV Details



 Gene Information 
Gene Name Tspan5
Old Gene Names for Tspan5 Tm4sf9 , 4930505m03rik , 2810455a09rik , Au024142
Gene Description tetraspanin 5 [Source:MGI Symbol;Acc:MGI:1928096]
Uniprot Name
CCDS Name
Gene GO
integral to membrane
Homolog in other species TSPAN5
Omim http://omim.org/entry/613136
Immgen Expression
MEDIAN(HIGHER IN NK GROUP, T.8MEM.LN, TGD.SPT.4NVE.PP, T.4FP3+25+.SP)
Gnf Expression
MEDIAN(HIGH IN CEREBELLUM, OLFACTORYBULB, DORSALROOTGANGLION, HIPPOCAMPUS, AMYGDALA, FRONTALCORTEX, CEREBRALCORTEX, CORTEX, PREOPTIC, SUBSTANTIANIGRA, HYPOTHALAMUS)
Novel Yes

 Mutation Information 
Mutation Type Non-synonymous
Ensembl ID ENSMUSG00000028152
Chromosome 3
Coordinate 138,890,756     (Assembly: GRCm38)    
Ref Base T
Codon Change Tcc/Ccc
Var Base C
Zygosity Heterozygous
Read Depth 407
Allele Frequency
T:R0.49
C:V0.51
Amino Acid Position 52
Amino Acid Change S->P (Serine -> Proline)
Sample ID IGL01603
Median Base Quality 35
Backgrounds Balb/c:C57BL/6
Source Walter and Eliza Hall Institute (WEHI-G1)
Other variants in this mouse 55 Other Mutations

 Predictions 
Polyphen Score 0.72
Polyphen Prediction Possibly damaging
Sift Score 0.13
Sift Prediction tolerated

 Protein domains 
ENSMUSP00000029800:
Image provided by Ensembl

Full name Short name Interpro SeqRegionName Type Start End Description Search pathways
Tetraspanin/Peripherin Tetraspanin/Peripherin IPR018499 ENSMUSP00000029800 Pfam 14
258 Description available Search pathways

 Availability Details 
Availability Cryopreserved